BamTools

On the 24 GB memory nodes load BamTools by typing the following:

$ module load bamtools

On the high memory nodes BamTools is at /share/apps/bamtools installed from Ubuntu.

Running

Here is an example submit script.

#!/bin/bash
#$ -cwd
### Job name:
#$ -N MyJobName
#$ -S /bin/bash
$ module load bamtools
bamtools command 1
bamtools command 2