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support:hpc:software:gale

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Gale

Gale http://www.geodynamics.org/cig/software/packages/long/gale is a 2D/3D code for the long-term tectonics community. The code solves problems related to orogenesis, rifting, and subduction with coupling to surface erosion models. Currently the installed version is 1.3.0.

Running

Here is a sample submit script for MPI-enabled Gale:

#!/bin/bash
#
#$ -cwd
#$ -j y
#$ -S /bin/bash
 
 
module load compilers/pathscale-3.2
module load mpi/openmpi-1.2.6-pathscale-3.2
module load math/petsc-2.3.2-p10-pathscale-3.2
 
module load geo/gale-1.3.0-pathscale-3.2
 
time mpirun Gale <input file>

Then change to your data directory and run the following command where N is the number of CPUs you want to use.

$ qsub -pe mpi N submit.sh

Build Notes

These are the steps we took to install the software.

module load compilers/pathscale-3.2
module load mpi/openmpi-1.2.6-pathscale-3.2
module load math/petsc-2.3.2-p10-pathscale-3.2
module load geo/gale-1.3.0-pathscale-3.2
./configure.py --prefix=/share/apps/gale-1.3.0-pathscale-3.2 --with-mpi-dir=/share/apps/openmpi-1.2.6/pathscale-3.2/
make
make install
support/hpc/software/gale.txt · Last modified: 2009/05/13 23:02 by bill